![]() ![]() Understand management of reference dataģ. Learn to work with reads from various platforms (Illumina, IonTorrent, Oxford Nanopore, Pacific Biosciences, BGI/MGI)Ģ. This webinar will introduce users to the tools. Learn about: Working with reads from various platforms (Illumina, IonTorrent, Oxford Nanopore, Pacific Biosciences, BGI/MGI) Tailored solutions for RNA-seq, DNA-seq and methylation Efficient algorithms for read trimming, mapping, de novo assembly and variant calling Effective management of reference data Scalable processing of many samples, with advanced workflow and reporting capabilities Easy installation on Windows, Mac and Linux.ġ. De novo assembly, BLAST and genome finishing using QIAGEN CLC Genomics Workbench. In this live webinar, Leif Schauser, Ph.D., Director Product Management Genome Analysis, will review a host of new features in the latest release of the QIAGEN CLC Genomics Workbench 20 that help you scale your research, and allow you to ramp up your productivity by taking your multi-sample analyses to the next level. Powered by cutting-edge technology and accelerated algorithms, it supports a comprehensive set of NGS data analysis applications. However these products are no longer under development.QIAGEN CLC Genomics Workbench is a powerful solution to analyze and visualize next generation sequencing (NGS) data. Hardware Įarly on, the company initially presented own-developed high-performance computing solutions, focusing on accelerating open source algorithms such as HMMER, Smith-Waterman and ClustalW, using FPGA technology. In 2020, CLC bio released a free plug-in that enables workflow execution on AWS directly from the CLC Genomics Workbench desktop software. YouTube WebQIAGEN CLC Genomics Workbench QIAGEN CLC Genomics Workbench is a. In 2019, this platform was adapted for and approved for use in AWS GovCloud. CLC Manuals - Transcript Discovery using CLC Genomics. The Biomedical Genomics Analysis plugin to QIAGEN CLC Genomics Workbench offers tools and workflows for all steps from data preprocessing and quality control through to data analyses, annotation and reporting. In 2017, CLC bio launched their CLC Genomics Cloud Engine as a command-line driven platform for cloud-based bioinformatics workflow execution on Amazon Web Services. Features include read mapping and de novo assembly of high-throughput sequencing data, whole-genome detection of SNPs and structural variations, ChIP-seq, RNA-Seq, small RNA analysis, genome finishing, microbial genomics, structural biology, and functions to analyze, visualize, and compare genomic, transcriptomic, and epigenomic data. pathway analysis, genomics, and other omics). Īs additional capabilities were added to the software platform, it was eventually split into several themed Workbenches and plugins with collections of features relevant to different applications (e.g. In 2010, CLC bio was notable as the first commercial platform for bioinformatics analysis that utilized a graphical user interface for building, managing, and deploying analysis workflows as well as command-line tools, a SOAP and REST API, and later, the ability to run containerized tools. CLC bio developed some of their own open source algorithms, as well as their own SIMD-accelerated implementations of several existing popular applications. Software ĬLC bio's main activities were in software development for desktop ( Mac OS X, Windows, and Linux), enterprise, and cloud software for analysis of biological data. ĬLC bio was acquired by QIAGEN in 2013 and merged into its bioinformatics research and development division with several other purchased platforms in 2014. By 2012, it had additional offices in Cambridge, Massachusetts, Tokyo, Taipei and Delhi, with staff largely from research backgrounds (30% having a PhD) and had built a userbase of around 250,000 users in both academic institutions and biotechnology companies. Its product's development was also partly funded by collaborating with researchers on grant-funded projects. ![]() CLC bio was a bioinformatics software company that developed a software suite subsequently purchased by QIAGEN.ĬLC bio started commercial activities on Januheadquartered in Aarhus, Denmark. ![]()
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